Environmentally-driven population dynamics model of Aedes albopictus
Project description
Environmentally-driven population dynamics model of Aedes albopictus
This is a python (v2.7) package implementing the environmentally-driven population dynamics model of Aedes albopictus.
Contents
Prerequisites
Linux installation
Usage
1) Prerequisites
The model requires the following packages, which are not included in this package:
numpy pkg_resources
2) Linux installation
Easy way:
- If you have pip installed, you can use the following command to download and install the package.
pip install albopictus
- Alternatively, you can download the source code from PyPI and run pip on the latest version xxx.
pip install albopictus-xxx.tar.gz
Hard way:
- If pip is not available, you can unpack the package contents and perform a manual install.
tar -xvzf albopictus-xxx.tar.gz cd albopictus-xxx python setup.py install
This will install the package in the site-packages directory of your python distribution. If you do not have root privileges or you wish to install to a different directory, you can use the –prefix argument.
python setup.py install –prefix=<dir>
In this case, please make sure that <dir> is in your PYTHONPATH, or you can add it with the following command.
- In bash shell:
export PYTHONPATH=<dir>:$PYTHONPATH
- In c shell:
setenv PYTHONPATH <dir>:$PYTHONPATH
Usage
Information for usage and contents are documented in the package, and can be accessed with the help utility.
import albopictus help(albopictus)
Credits
‘modern-package-template’ - http://pypi.python.org/pypi/modern-package-template
News
0.3
Release date: 9 February 2016
This is the model as presented in Erguler K, Smith-Unna SE, Waldock J, Proestos Y, Christophides GK, Lelieveld J, Parham PE. Large-scale modelling of the environmentally-driven population dynamics of temperate Aedes albopictus (Skuse). PLOS ONE. 2016 (in press)
This version also includes posterior Q1b, which is sampled from posterior mode Q1 for subsequent research
0.2
Release date: UNRELEASED*
Includes the prior distribution
0.1
Release date: UNRELEASED*
Initial commit
Project details
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