Visualisation and exploration of brain atlases and other anatomical data
Project description
Brainrender
brainrender
is a python package for the visualization of three dimensional neuro-anatomical data. It can be used to render data from publicly available data set (e.g. Allen Brain atlas) as well as user generated experimental data. The goal of brainrender is to facilitate the exploration and dissemination of neuro-anatomical data by providing a user-friendly platform to create high-quality 3D renderings.
Docs
:books: brainrender docs
Installation
You can install brainrender
with:
pip install brainrender
Contributing
Contributions to brainrender are more than welcome. Please see the developers guide. Note that some tests are only run locally, by specifying --runslow --runlocal
in pytest
.
Citing brainrender
If you use brainrender
in your work, please cite:
Claudi, F., Tyson, A. L., Petrucco, L., Margrie, T.W., Portugues, R., Branco, T. (2021) "Visualizing anatomically registered data with Brainrender" <i>eLife</i> 2021;10:e65751 [doi.org/10.7554/eLife.65751](https://doi.org/10.7554/eLife.65751)
Examples
The following images were created for the publication of the brainrender paper. References to the original data being visualised can also be found in the paper.
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