The python sister project to CortexJDK
Project description
docs |
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Cortexpy is a Python package for sequence analysis using linked and colored De Bruijn graphs such as the ones created by Mccortex. This project aims to mirror many of the features contained in CortexJDK.
Free software: Apache Software License 2.0
Installation
pip install cortexpy
Development
Set up the project:
make init
To run the all tests run:
tox
Note, to combine the coverage data from all the tox environments run:
Windows |
set PYTEST_ADDOPTS=--cov-append tox |
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Other |
PYTEST_ADDOPTS=--cov-append tox |
Bugs
Please raise a github issue for any bugs.
Release history Release notifications | RSS feed
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