SARS-CoV-2 data converter between Genbank/GISAID/ENA formats

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License: GNU General Public License v3 (GPLv3) (GPL 3)

Author: Maximilian Haeussler

Requires: Python >=2.7

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Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.

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Avatar for maximilianh from gravatar.com maximilianh

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License: GNU General Public License v3 (GPLv3) (GPL 3)

Author: Maximilian Haeussler

Requires: Python >=2.7

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1.0

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