napari-sam 0.2.3

Segment anything with Meta AI's new SAM model!

Segment Anything Model (SAM) in Napari

Segment anything with our Napari integration of Meta AI's new Segment Anything Model (SAM)!

SAM is the new segmentation system from Meta AI capable of one-click segmentation of any object and now our plugin neatly integrates this into Napari.

We already extended SAMs click-based foreground separation to full click-based semantic segmentation & instance segmentation!

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Everything mode	Click-based semantic segmentation mode	Click-based instance segmentation mode

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SAM in Napari demo

Click to play the video

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Installation

The plugin requires python>=3.8, as well as pytorch>=1.7 and torchvision>=0.8. Please follow the instructions here to install both PyTorch and TorchVision dependencies. Installing both PyTorch and TorchVision with CUDA support is strongly recommended.

You can install napari-sam via pip:

pip install git+https://github.com/facebookresearch/segment-anything.git
pip install napari-sam

To install latest development version :

pip install git+https://github.com/MIC-DKFZ/napari-sam.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the Apache Software License 2.0 license, "napari-sam" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.