Toolbox for basic Generalized Linear Models (GLMs) for neural data analysis
Project description
nemos
NEural MOdelS, a statistical modeling framework for neuroscience.
Disclaimer
This is an alpha version, the code is in active development and the API is subject to change.
Setup
To install, clone this repo and install using pip:
git clone git@github.com:flatironinstitute/nemos.git
cd nemos/
pip install -e .
If you have a GPU, you may need to install jax separately to get the proper
build. The following has worked for me on a Flatiron Linux workstation: conda install jax cuda-nvcc -c conda-forge -c nvidia. Note this should be done
without jax and jaxlib already installed, so either run this before the
earlier pip install command or uninstall them first (pip uninstall jax jaxlib). See jax docs for
details (the pip instructions did not work for me).
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