oct-to-tiff 0.1.1

A command line tool for converting optical coherence tomography angiography (OCTA) data.

oct-to-tiff

A command line tool for converting optical coherence tomography angiography (OCTA) data.

Installation

pip install oct-to-tiff

Getting Started

oct-to-tiff /path/to/image.OCT

will read an OCT volume and write to a single OME-TIFF file, including voxel size in the metadata.

For more options, run oct-to-tiff --help.

Supported scan patterns

This tool has been developed for use with data from the Optovue RTVue XR Avanti System.

Due to limited test data, only the following scan patterns are currently supported:

OCT

• 3D Cornea
• 3D Disc
• 3D Retina
• 3D Widefield
• 3D Widefield MCT
• Angle
• Cornea Cross Line
• Cornea Line
• Cross Line
• Enhanced HD Line
• GCC
• Grid
• Line
• Pachymetry Wide
• Radial Lines
• Raster

OCTA

• Angio Disc
• Angio Retina
• HD Angio Disc
• HD Angio Retina

Requirements

Requires Python 3.7 or higher.