Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.
Project description
PeepingTom
PeepingTom is a python tool for visualising and interacting with cryo-ET and subtomogram averaging data. It leverages the fast, multi-dimensional napari viewer and the scientific python stack.
DISCLAIMER: this package is in early development phase. Expect frequent bugs and crashes. Please, report them on the issue tracker and ask if anything is unclear!
Installation
pip install peepingtom
Basic Usage
From the command line:
peep /path/to.star /path/to/mrc/files/
PeepingTom accepts any combination of files and directory, and will try find the right files and display them in napari. peep will also start an ipython shell with the following setup:
import peepingtom as pt
peeper = Peeper([your_data])
viewer = peeper.napari_viewer
For more information, check out the help page with peep -h and head over to the docs.
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