Analyse Pore-C data.
Project description
Pore_c_py
This package provides python scripts for working with Pore-C data
Use --help
with to find detailed usage instructions.
Installation
Via pip:
pip install pore-c-py
Or via conda:
conda install -c epi2me-labs pore-c-py
Usage
$ pore-c-py --help
usage: pore_c_py [OPTIONS] COMMAND [ARGS].
Available subcommands are:
digest Digest concatemer sequences into monomers using a restriction enzyme.
annotate Annotate alignments with a "walk", which simply
enumerates the alignment coordinates of the monomers comprising the
concatemer.
Examples
Digest concatemer sequences in to monomers:
pore-c-py digest <input concatemers bam> <restriction enzyme> <output monomers bam file name>
Parse a bam of aligned monomers:
pore-c-py annotate <input bam> <output bam file name>
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