python bindings for ROBEX brain extraction
Project description
pyrobex
Python bindings for ROBEX brain extraction.
This package comes with ROBEX v1.2 for Linux. Windows is not currently supported.
Free software: BSD license
Documentation: https://pyrobex.readthedocs.io.
Install
The easiest way to install the package is with:
pip install pyrobex
Alternatively, you can download the source and run:
python setup.py install
Basic Usage
This package provides a CLI (to the CLI) of ROBEX for convenience and testing which can be accessed through, e.g.,:
robex path/to/t1w_image.nii path/to/stripped.nii path/to/mask.nii
The real use-case of this package is by importing robex and using it within another script or neuroimaging pipeline, e.g.,:
import nibabel as nib from pyrobex import robex image = nib.load('path/to/t1w_image.nii') stripped, mask = robex(image)
History
0.1.0 (2021-05-05)
First release on PyPI.
Project details
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
pyrobex-0.2.0.tar.gz
(50.4 MB
view hashes)
Built Distribution
Close
Hashes for pyrobex-0.2.0-py2.py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 9aa55baf07f6667a7c13682aef2525323d7ee420db6a83313f200501bd30d220 |
|
MD5 | f005ed998abbee62737920ce2f355d6e |
|
BLAKE2b-256 | c47e959b93b373e4160133ccbe2fd13eb4ad76b862fce7b560dffb143160fb42 |