python bindings for ROBEX brain extraction
Project description
pyrobex
Python bindings for ROBEX brain extraction.
This package comes with ROBEX v1.2 for Linux. Windows is not currently supported.
Free software: BSD license
Documentation: https://pyrobex.readthedocs.io.
Install
The easiest way to install the package is with:
pip install pyrobex
Alternatively, you can download the source and run:
python setup.py install
Basic Usage
This package provides a CLI (to the CLI) of ROBEX for convenience and testing which can be accessed through, e.g.,:
robex path/to/t1w_image.nii path/to/stripped.nii path/to/mask.nii
The real use-case of this package is by importing robex and using it within another script or neuroimaging pipeline, e.g.,:
import nibabel as nib from pyrobex import robex image = nib.load('path/to/t1w_image.nii') stripped, mask = robex(image)
History
0.1.0 (2021-05-05)
First release on PyPI.
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