Scalable Cytometry Image Processing (SCIP) is an open-source tool that implements an image
Project description
SCIP: Scalable Cytometry Image Processing
Scalable Cytometry Image Processing (SCIP) is an open-source tool that implements an image processing pipeline on top of Dask, a distributed computing framework written in Python. SCIP performs normalization, image segmentation and masking, and feature extraction.
Check the docs for installation and usage instructions.
Development
Generating documentation
cd docs
rm -r source/generated/
sphinx-apidoc -f -T -o source/generated/ ../src/scip
make clean
make html
Generate release changelog
git log v{previous version tag}..HEAD --oneline | xclip -sel clip
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