23 projects
KapoorLabs-Lightning
Lightning modules for KapoorLabs specific projects
napatrackmater
Import Trackmate XML files for Track Visualization and analysis in Napari.
vollseg
Segmentation tool for biological cells of irregular size and shape in 3D and 2D.
vollseg-napari-trackmate
Track analysis using TrackMate xml and csv generated tracks using NapaTrackMater as the base library
caped-ai-tabulour
A base table widget for KapoorLabs Napari plugins
caped-ai-metrics
Metric computation toolkit for segmentation and classification tasks
oneat
Action classification for TZYX/TYX shaped images, Static classification for TYX/YX shaped images
vollseg-napari-mtrack
Segment kymographs of microtubules, actin filaments and perform Ransac based fits to compute dynamic instability parameters for individual kymographs and also in batch
quartic-solver-kapoorlabs
A package containing methods for solving quartic, cubic, quadratic, and depressed equations.
vollseg-napari
Irregular cell shape segmentation using VollSeg
caped-ai-augmentations
Augmentations for volume, planar segmentation, classification image segmentation and associated csv file of oneat clicks.
caped-ai
Content aware prediction and detection based on artificial intelligence.
caped-ai-sentinal
A wrapper function package to call Sentinal library for training
caped-ai-mtrack
Ransac based methods for function fits on segmentation of kymographs of actin and microtubules as a library package
cellpose-vollseg
modification of cellpose algorithm
caped-ai-visualizations
Visualization toolkit for oneat bounding boxes, activation functions, vollseg visualization
viz-oneat
Neural network activation visualization tool.
oneat-augmentations
Augmentations for volume, planar segmentation, classification image segmentation and associated csv file of oneat clicks.
slimoneat
Static and Dynamic classification tool.
oneat-slim
Static and Dynamic classification tool.
pyfiji
Python scripts as precursor to Fiji plugins
pecowaco
Analysis of Periodic contractions
embryoseg
SmartSeed Segmentation for animal embryonic cells.