19 projects
funlib.persistence
Interfaces for data (arrays and graphs) and storage formats (databases and file formats)
funtracks
Cell tracking data model
motile-tracker
Application for interactive tracking with global optimization
gunpowder
A library to facilitate machine learning on large, multi-dimensional images.
morphix
Trainable Morphogenesis Simulation in JAX
ilpy
Unified API for ILP solvers.
lsd-lite
Simple LSD and affinity graph computation
spatial-graph
A spatial graph datastructure for python.
finn-viewer
n-dimensional array viewer for cell tracking data in Python
structsvm
Structured Bundle Method for Risk Minimization.
motile-toolbox
A toolbox for tracking with (motile)[https://github.com/funkelab/motile].
motile-plugin
Tracking with motile
daisy
Blockwise task scheduler for processing large volumetric data.
funlib.show.neuroglancer
None
motile
Multi-Object Tracker using Integer Linear Equations
funlib.geometry
A package for Coordinates, Rois and common operations in Coordinate spaces.
augment-nd
Simple elastic augmentation for ND arrays.
funlib.math
some math functions
lsds
Local Shape Descriptors.
