14 projects
scqtlib
scQTLib: single-cell quantitative trait analysis library
TemporalVAE
TemporalVAE: Temporal mapping of single cells with time-VAE
SNPmanifold
SNPmanifold: Manifold learning for single-cell SNVs
SpatialDM
SpatialDM: Spatial co-expression Detected by bivariate Moran
vireoSNP
vireoSNP - donor deconvolution for multiplexed scRNA-seq data
nnlite
Some utilities and wrappers for Neural Network Models
brie
BRIE: Bayesian regression for isoform estimate
mquad
MQuad - Mixture Modelling for Mitochondrial Mutation detection
bbmix
BBMix: inference of beta-binomial mixture model
hilearn
HiLearn: A small library of machine learning methods.
pyseqlib
pySeqLib: A small python library to process sequencing data.
cellSNP
cellSNP - Analysis of expressed alleles in single cells
diceseq
DICEseq: Dynamic Isoform spliCing Estimator via sequencing data
briekit
BRIE-kit: Preprocessing tool kit of BRIE in splicing analysis
