37 projects
singler
Python bindings to the singleR algorithm to annotate cell types from known references.
SingleCellExperiment
Container class for single-cell experiments
cellarr
TileDB-based array storage for single-cell data collections.
celldex
Index of Reference Cell Type Datasets
scrnaseq
Collection of Public Single-Cell RNA-Seq Datasets
gypsum-client
Python client to gypsum REST API
dolomite-se
Save and load summarized experiments in the dolomite framework!
DelayedArray
Delayed array operations from Bioconductor
pyBiocFileCache
File based cache for resources and metadata
dolomite-mae
Save and load multi-assay experiments in the dolomite framework!
dolomite-sce
Save and load single-cell experiments in the dolomite framework!
dolomite-base
Save and load Bioconductor objects in Python
dolomite-ranges
Stage and load genomic ranges from disk.
SummarizedExperiment
Container to represent data from genomic experiments
BiocFrame
Flexible dataframe representation to support nested structures.
pygobbler
Python client for the Gobbler service
SewerRat
Python client for the SewerRat API
GenomicRanges
Container class to represent and operate over genomic regions and annotations.
hdf5array
HDF5-backed objects for array and matrix like data
tiledbarray
TileDb backed objects for array and matrix like data
dolomite-matrix
Save and load matrices in the dolomite framework
scranpy
Analyze multi-modal single-cell data!
mattress
All your matrix representations belong here!
dolomite
Wrapper package for all dolomite-* packages.
FileBackedArray
File backed objects for array and matrix like data
IRanges
Python implementation of the [**IRanges**](https://bioconductor.org/packages/IRanges) Bioconductor package.
rds2py
Parse and read RDS files as Python representations
biocutils
Utilities to use across the biocpy packages.
MultiAssayExperiment
Container class for representing and managing multi-omics genomic experiments
mopsy
Matrix operations for numpy and scipy
dolomite-schemas
JSON schemas for bioconductor objects.
BiocGenerics
Generics for core data structures in biocpy
assorthead
Assorted C++ headers
cpptypes
Automatically creates the C++ and Python-side wrappers for ctypes bindings.
BiocPy
Interface to all [BiocPy](https://github.com/BiocPy) packages
epivizFileParser
Parse and Query Genomic File Formats.
epivizFileServer
A python library to interact, explore and compute data directly from genomic files.
