30 projects
evidence-normalizer
VICC normalization routines for evidence
variation-normalizer
VICC normalization routine for variations
vrs-anvil-toolkit
Useful tools and methods for applying GA4GH GKS and VRS models on the NHGRI AnVIL platform.
ga4gh.cat-vrs
GA4GH Categorical Variation Representation (Cat-VRS) reference implementation
ga4gh.vrs
GA4GH Variation Representation Specification (VRS) reference implementation
civicpy
CIViC variant knowledgebase analysis toolkit.
cool-seq-tool
Common Operation on Lots of Sequences Tool
anyvar
AnyVar provides Python and REST interfaces to validate, normalize, generate identifiers, and register biological sequence variation according to the GA4GH Variation Representation standards.
fusor
Computable object representation and validation for gene fusions
biocommons.anyvar
AnyVar provides Python and REST interfaces to validate, normalize, generate identifiers, and register biological sequence variation according to the GA4GH Variation Representation standards.
thera-py
VICC normalization routines for therapeutics
disease-normalizer
VICC normalization routines for diseases
gene-normalizer
VICC normalization routines for genes
agct
Another Genome Conversion Tool: Python frontend to Rust chainfile crate
ga4gh.va-spec
GA4GH Variant Annotation (VA) reference implementation
eutils
Python interface to NCBI's eutilities API
hgvs
HGVS Parser, Formatter, Mapper, Validator
biocommons-example
biocommons.example package (namespaced)
metakb
A search interface for cancer variant interpretations assembled by aggregating and harmonizing across multiple cancer variant interpretation knowledgebases.
vrsix
Tools for indexing GREGoR VCFs
biocommons.seqrepo
Non-redundant, compressed, journalled, file-based storage for biological sequences
bioutils
miscellaneous simple bioinformatics utilities and lookup tables
uta-align
C-based sequence alignment for Python
seqrepo-rest-service
SeqRepo REST Service
hgvs-dataproviders-rest
hgvs dataproviders based on UTA and SeqRepo REST Interfaces
py-gene-fusions
Package for structuring gene fusions
uta
Universal Transcript Archive
