17 projects
nnunetv2
nnU-Net is a framework for out-of-the box image segmentation.
radtract
Radiomic Tractometry for advanced along-tract analysis of diffusion-weighted MRI
mzarr
Mzarr (Multi-Resolution Zarr) is a Python library for working with the Mzarr image format
tqdmp
Multiprocessing with tqdm progressbars!
dynamic-network-architectures
none
ParticleSeg3D
Scalable, out-of-the box segmentation of individual particles from mineral samples acquired with micro CT
patchly
A grid sampler for N-dimensional images
napari-mzarr
A reader and writer plugin for the Mzarr image format.
napari-sam
Segment anything with Meta AI's new SAM model!
napari-nifti
A napari plugin for reading and writing NIFTI files that have the extension .nii or .nii.gz.
cmdint
Enables detailed logging of command line calls in a very lightweight manner.
nnunet
nnU-Net. Framework for out-of-the box biomedical image segmentation.
batchgenerators
Data augmentation toolkit
acvl-utils
Super cool utilities that we just love to use
hd-glio
Tool for brain tumor segmentation. This is the result of a joint project between the Department of Neuroradiology at the Heidelberg University Hospital and the Division of Medical Image Computing at the German Cancer Research Center (DKFZ). See readme.md for more information
hd-gliomouse
Tool for brain tumor segmentation in mice. This is the result of a joint project between the Department of Neuroradiology at the Heidelberg University Hospital and the Division of Medical Image Computing at the German Cancer Research Center (DKFZ). See readme.md for more information
trixi
Manage your machine learning experiments with trixi - modular, reproducible, high fashion
