19 projects
fmriprep-docker
A wrapper for generating Docker commands using regular fMRIPrep syntax
fmriprep
A robust and easy-to-use pipeline for preprocessing of diverse fMRI data
niworkflows
NeuroImaging Workflows provides processing tools for magnetic resonance images of the brain.
nibabies-wrapper
A wrapper for generating Docker and Apptainer/Singularity commands for simpler NiBabies usage
nibabies
Processing workflows for magnetic resonance images of the brain in infants
templateflow
TemplateFlow Python Client - TemplateFlow is the Zone of neuroimaging templates.
sdcflows
Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes.
smriprep-docker
A wrapper for generating Docker commands using regular sMRIPrep syntax
smriprep
Structural MRI Preprocessing Pipelines
nitransforms
NiTransforms -- Neuroimaging spatial transforms in Python.
nireports
NiReports - The Visual Report System (VRS) of NiPreps
mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain.
nipreps-synthstrip
NiPreps implementation of FreeSurfer's SynthStrip
mriqc-learn
Learning on MRIQC-generated image quality metrics (IQMs).
eddymotion
Pure python eddy-current and head-motion correction for dMRI, an extension of QSIprep's SHOREline algorithm (Cieslak, 2020) to multiple diffusion models.
migas
A Python package to communicate with a migas server.
nipreps
Namespace package for nipreps utilities
nirodents
NeuroImaging Rodents (NiRodents) provides processing tools for magnetic resonance images of the rodent brain.
dmriprep
dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data.
