66 projects
mm-test-adapters
None
bffile
Yet another Bio-Formats wrapper for python
fieldz
Utilities for providing compatibility with many dataclass-like libraries
griffe-fieldz
Griffe extension adding support for data-class like things (pydantic, attrs, etc...)
cmap
Scientific colormaps for python, without dependencies
useq-schema
Schema for multi-dimensional microscopy experiments
yaozarrs
Yet another ome-zarr model.
pymmcore-widgets
A set of Qt-based widgets onto the pymmcore-plus model
napari-bioformats
napari bfffile plugin
pymmcore-plus
pymmcore superset providing improved APIs, event handling, and a pure python acquisition engine
napari-micromanager
Micro-Manager GUI interface in napari.
npe2
napari plugin engine v2
napari-plugin-engine
napari plugin engine, fork of pluggy
ndv
Simple, fast-loading, n-dimensional array viewer, with minimal dependencies.
ome-writers
OME-TIFF and OME-ZARR writer APIs designed for microscopy acquisition
superqt
Missing widgets and components for PyQt/PySide
PyQt6Ads
Python bindings for Qt Advanced Docking System
nd2
Yet another nd2 (Nikon NIS Elements) file reader
mrc
Read and write .mrc and .dv (deltavision) image file format
psygnal
Fast python callback/event system modeled after Qt Signals
microsim
Light microscopy simulation in python
napari-omero
napari/OMERO interoperability
ome-types
Python dataclasses for the OME data model
app-model
Generic application schema implemented in python
napari-sphinx-theme
Bootstrap-based Sphinx theme from the napari community
pymmcore
Python bindings for MMCore, Micro-Manager's device control layer
ilpy
Unified API for ILP solvers.
mkdocs-api-autonav
Autogenerate API docs with mkdocstrings, including nav
pymmcore-nano
Alternative python bindings for MMCore, Micro-Manager's device control layer
hatch-min-requirements
Hatchling plugin to create optional-dependencies pinned to minimum versions
pymm
A Micro-Manager GUI based on pymmcore-widgets and pymmcore-plus.
pymmcore-gui
A Micro-Manager GUI based on pymmcore-widgets and pymmcore-plus.
spatial-graph
A spatial graph datastructure for python.
witty
Well-in-Time Compiler for Cython Modules
magicgui
build GUIs from python types
scenex
Declarative scene graph model and backend abstraction.
pyconify
iconify for python. Universal icon framework
napari-svg
A plugin for writing svg files with napari
fpbase
Python wrapper for FPBase API
pycudadecon
Python wrapper for CUDA-accelerated 3D deconvolution
in-n-out
plugable dependency injection and result processing
llspy
Lattice Light Sheet Processing Tools.
pydantic-compat
Compatibility layer for pydantic v1/v2
pymmcore-midi
Midi control for microscopes using pymmcore
dataclass-compat
Utilities for providing compatibility with many dataclass-like libraries
psfmodels
Scalar and vectorial models of the microscope point spread function (PSF).
fonticon-materialdesignicons6
Material Design Icons extension for superqt font icons
fonticon-materialdesignicons7
Material Design Icons 7 extension for superqt font icons
fonticon-fontawesome6
FontAwesome 6 extension for superqt font icons
napari-ndtiffs
napari plugin for nd tiff folders with OpenCl deskew
mgui
guis for declarative models
napari-error-reporter
Opt-in automated bug/error reporting for napari
bioformats-jar
bioformats_package.jar installer for scyjava
napari-spacemouse
3DConnexion SpaceMouse support for napari
napari-manual-transforms
Interface to manually edit layer affine transforms
napari-math
Simple mathematical operations on image, point and surface layers.
napari-dv
Deltavision/MRC file reader for napari
fonticon-fontawesome5
FontAwesome 5 extension for superqt font icons
resource-backed-dask-array
experimental Dask array that opens/closes a resource when computing
llspy-slm
Lattice Light Sheet SLM Pattern Generator
QtRangeSlider
Multi-handle range slider widget for PyQt/PySide
napari-pims-bioformats
PIMS bioformats plugin for napari
tifffolder
Easily parse/access a subset of data from a <=6D folder of TIFFs
napari-s3zarr
load zarr stores from s3 into napari via dask
minimal-deploy
A minimal Python package
waterz
Simple watershed and agglomeration for affinity graphs.
