29 projects
sourmash-plugin-betterplot
sourmash plugin for improved plotting/viz and cluster examination.
screed
a Python library for loading FASTA and FASTQ sequences
sourmash-plugin-abundhist
sourmash plugin to calculate abundance profiles.
bbhash
A Python wrapper for the BBHash Minimal Perfect Hash Function
sourmash-plugin-branchwater
fast command-line extensions for sourmash
twill
A web browsing and testing language
sourmash-plugin-pangenomics
sourmash plugin to do pangenomics.
genome-grist
tools to support genome and metagenome analysis
get-some-ncbi-genomes
download one or more NCBI genomes by accession
taxburst
sunburst plots for taxonomy
sourmash
tools for comparing biological sequences with k-mer sketches
dinkum-bio
directed interaction network kit for modeling, focused on GRNs
sourmash-plugin-containment-search
sourmash plugin for improved output of containment search for metagenomes - DEPRECATED
sourmash-utils
Python utilities for sourmash plugins and scripts
chill-filter
rapid sample screening for shotgun DNA sequencing data sets
oxli
oxli is a Rust library + Python interface for counting k-mers in genomic sequencing data.
sourmash-plugin-venn
sourmash plugin to build venn diagrams - DEPRECATED. Use 'sourmash_plugin_betterplot' instead.
pyo3-branchwater
fast search and gather extensions for sourmash
sourmash-plugin-commonhash
sourmash plugin to calculate common hashes across multiple sketches.
sourmash-mixers
this meta-package installs a collection of sourmash plugins!
sourmash-plugin-sketchall
sourmash plugin to sketch many sequence files
spacegraphcats
tools for biological assembly graph neighborhood analysis
ribbity
convert github issues into a mkdocs site
pinocchio
pinocchio plugins for the nose testing framework
khmer
khmer k-mer counting library
syrah
extract trusted k-mers from raw sequencing data
buoy
figleaf
figleaf code coverage tool
session2
Persistent sessions for Quixote 2.x
