bbcu.reportIlluminaInterop 1.0.0

Create SAV statistics

# bbcu.illuminaInterop

The package creates file with statistics of sequencing run (Next-seq or High-seq machines of illumina).

The run command is:

bbcu.illuminaInterop-1.0.1/bin/run-sav-stat.py –input-folder INPUT_FOLDER –output-file OUTPUT_FILE

INPUT_FOLDER - Run folder of the machine. Need to looked like this: 180717_NB551168_0163_AHF727BGX7 OUPUT_FILE - Your name for the output file (with .txt extension).

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Example of output files are under “examples” folder.

You can convert it to pdf with the commnad:

pandoc -o OUTPUT_FILE.pdf –variable=geometry:landscape OUTPUT_FILE