biomappings 0.0.1

Curated and predicted mappings between biomedical identifiers in different namespaces

biomappings

Community curated and predicted equivalences and related mappings between named biological entities that are not available from primary sources.

Human-curated mappings are in src/biomappings/resources/mappings.tsv, and automatically predicated mappings are in src/biomappings/resources/predictions.tsv

Equivalences and related mappings that are available from the OBO Foundry and other primary sources can be accessed through Inspector Javert's Xref Database on Zenodo which was described in this blog post.

⬇️ Installation

This code has yet to be released on PyPI. In the meantime, it can be installed with the following from the main branch on GitHub:

$ pip install git+https://github.com/biomappings/biomappings.git

To install in development mode, use the following:

$ git clone git+https://github.com/biomappings/biomappings.git
$ cd biomappings
$ pip install -e .

License

Code is licensed under the MIT License. Data is licensed under the CC0 1.0 Universal License.