A biomedical and clinical natural language processing engine.
Project description
BioMedICUS
The BioMedical Information Collection and Understanding System (BioMedICUS) is a system for large-scale text analysis and processing of biomedical and clinical reports. The system is being developed by the Natural Language Processing and Information Extraction Program at the University of Minnesota Institute for Health Informatics.
This is a collaborative project that aims to serve biomedical and clinical researchers, allowing for customization with different texts.
More information about BioMedICUS can be found on our website.
Prerequisites
- Python >=3.7,<3.11. Python 3.11 is not supported because PyTorch doesn't support it yet.
- Java JDK 8+. Note, you will need to have the "java" command on the your "$PATH".
Installation
Installation instructions are available on our website.
Guides
Additional guides for usage and development are also available on our website.
Contact
BioMedICUS is developed by the NLP/IE Group at the University of Minnesota Institute for Health Informatics. You can contact us at nlp-ie@umn.edu.
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