cno 0.0.4

CNO (Cell Net Optimiser): Manipulate, Visualise and Optimise Biological Networks to Perturbation Data.

Have a look at

• www.cellnopt.org for the context

and those notebooks - https://github.com/cellnopt/cellnopt/tree/master/notebooks - https://github.com/cokelaer/euroscipy_proceedings/blob/master/papers/cokelaer/cokelaer.rst

To be provided:

• [x] pre-processing tools

• [ ] boolean analysis

• [ ] discrete time analysis

• [ ] fuzzy analysis

• [x] connection to cnor feeder connection

• [ ] ode analysis

• [ ] Visualisation

• [ ] data : move cellnopt.data into here

• [x] move cellnopt.admin to here ?

• [ ] move cellnopt.core as cellnopt.io in here ? - [x] midas - [x] sif/reactions - [x] cnograph - [ ] normalisation - [x] compression - [ ] mapback - [ ] models - [x] cna

• [ ] R packages available in CellNOptR repository - [x] boolean T1 - [x] boolean T2 - [x] fuzzy - [x] discrete time - [x] ode

• [ ] optimisation and modelisation - [ ] boolean T1 - [ ] boolean T2 - [ ] fuzzy - [ ] discrete time - [ ] ode