co 0.1.0

Python library for copying DNA components with mutations

Co is a Python library for altering annotated DNA sequences. It keeps track of components and lifts over feature annotations when a component is “mutated” by applying a series of mutations. With co you can build new consensus sequences for cloned organisms and follow changes to feature annotations within a lineage.

>>> from co import Component
>>> from co.mutations import *
>>> hi_x = Component('Hello X!')
>>> hi_x.seq
Seq('Hello X!', Alphabet())
>>> hi_world = hi_x.mutate([Mutation(6, 1, 'world')])
>>> hi_world.seq
Seq('Hello world!', Alphabet())