gotran 2022.0.0

A declarative language describing ordinary differential equations.

Gotran - General ODE TRAnslator

Gotran:

• provides a Python interface to declare arbitrary ODEs.

• provides an interface for generating CUDA/C/C++/OpenCL/Julia/Python/Matlab code for a number of functions including the right hand side and symbolic generation of a Jacobian.

• is intentionally lightweight, and could be interfaced by other Python libraries needing functionalities to abstract a general ODE.

• depends on NumPy, and on SymPy. See further instructions in INSTALL

• can load models from external ODE description files such as CellML

Install

You can install gotran through pip

python -m pip install gotran

or conda

conda install -c comphy gotran

or if you want to work with the latest version you can install the developement version by either cloning the repository and run

python -m pip install .

inside the root directory or run

python -m pip install git+https://github.com/ComputationalPhysiology/gotran.git

Documentation

Documentation can be found here: http://computationalphysiology.github.io/gotran/

Source code

Source code can be found at https://github.com/ComputationalPhysiology/gotran.

License

gotran is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

gotran is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details.

You should have received a copy of the GNU Lesser General Public License along with gotran. If not, see http://www.gnu.org/licenses/.

Contributors

Gotran is developed by Johan Hake. The version of gotran found in this repository is maintained by Henrik Finsberg and Kristian Hustad.