IBL atlas module
Project description
iblatlas
Tools to manipulate hierarchical 3D representations of the mouse brain anatomy for electrophysiolgy experiments. The tools are mainly using the Allen CCF although some other atlases can be used.
This repository uses minimal requirements, based of standard matplotlib, numpy and scipy libraries, to the exclusion
of more complex visualization tools such as pyqt.
Documentation
Installation
pip install iblatlas
For GUI features, you'll need to install with optional dependencies:
pip install iblatlas[gui]
Contributing
Changes are merged by pull requests. Release checklist:
- Update version in
iblatlas/__init__.py - Update
CHANGELOG.md - Create a pull request to the
mainbranch on GitHub - Once the PR is merged, create a new tag and push the tag
Once a tag is pushed on main the package is uploaded to PyPI using GitHub Actions.
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