Modern Cpp binding for complete-striped-smith-watern-library
Project description
Modern C++ Binding for SSW Library
Changes
- Add Modern C++ Binding
- Use pybind11 Binding
- Provide Python api
Installation
$ pip install mssw
Usage
import mssw
reference = "CAGCCTTTCTGACCCGGAAATCAAAATAGGCACAACAAA"
query = "CTGAGCCGGTAAATC"
masklen = 15
aligner = mssw.StripedSmithWaterman.Aligner()
aligner_filter = mssw.StripedSmithWaterman.Filter()
alignment = mssw.StripedSmithWaterman.Alignment()
aligner.Align(query, reference, len(reference), aligner_filter, alignment, masklen)
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