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License: Mozilla Public License 2.0 (MPL 2.0)

Author: K.D. Murray

Requires: Python >=3.8

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Project description

Raugraf

Pangenomic diversity metrics

Install

pipx install raugraf

Tools

Local Complexity/Node Radius

raugraf local-complexity \
	--graph mygraph.gfa \        # GFA from PGGB (or at least passed thru smooothxg and odgi)
	--jumps 20 \                 # Traverse up to 20 nodes away from the focal node
	--node-bed out.bedGraph      # Bedgraph of local complexity per node for each path in the pangenome

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License: Mozilla Public License 2.0 (MPL 2.0)

Author: K.D. Murray

Requires: Python >=3.8

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This version

0.0.5

0.0.4

0.0.1

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