Skip to main content

RNA contamination detector

Project description

https://travis-ci.org/LUMC/rna_cd.svg?branch=master https://codecov.io/gh/LUMC/rna_cd/branch/master/graph/badge.svg Documentation Status

RNA Contamination Detector

rna_cd is a python package and command line tool designed to detect RNA contamination of DNA-seq experiments.

For our complete documentation, please checkout our readthedocs page.

Requirements

  • Python 3.5+

  • click

  • scikit-learn

  • pysam

  • matplotlib

Installation

$ pip install rna-cd

License

AGPLv3+

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

rna_cd-0.1.0.tar.gz (7.9 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

rna_cd-0.1.0-py3-none-any.whl (23.0 kB view details)

Uploaded Python 3

File details

Details for the file rna_cd-0.1.0.tar.gz.

File metadata

  • Download URL: rna_cd-0.1.0.tar.gz
  • Upload date:
  • Size: 7.9 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.13.0 pkginfo/1.5.0.1 requests/2.21.0 setuptools/40.8.0 requests-toolbelt/0.9.1 tqdm/4.31.1 CPython/3.6.7

File hashes

Hashes for rna_cd-0.1.0.tar.gz
Algorithm Hash digest
SHA256 a88bacede091319da4879f79b9688aea7f5a12f7f5107b3850804fed0d7044cc
MD5 6b1097958136cdd6e69ab5a9f3c526eb
BLAKE2b-256 13d97ed12d4e51fb38bf075eebb331e66565e3848a82e5112db72dd0363590e7

See more details on using hashes here.

File details

Details for the file rna_cd-0.1.0-py3-none-any.whl.

File metadata

  • Download URL: rna_cd-0.1.0-py3-none-any.whl
  • Upload date:
  • Size: 23.0 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.13.0 pkginfo/1.5.0.1 requests/2.21.0 setuptools/40.8.0 requests-toolbelt/0.9.1 tqdm/4.31.1 CPython/3.6.7

File hashes

Hashes for rna_cd-0.1.0-py3-none-any.whl
Algorithm Hash digest
SHA256 9939eff32a0d3dd388b6f1592c0c8bfb38213d373e2ec5a42653bf078b82d013
MD5 d3a0ea7382fae6010fc724d278a28f5b
BLAKE2b-256 459340f3668c98be54536288a9afd3dab75d4356f020afb3462fdffca7c3a9c3

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page