RNA contamination detector
Project description
RNA Contamination Detector
rna_cd is a python package and command line tool designed to detect RNA contamination of DNA-seq experiments.
For our complete documentation, please checkout our readthedocs page.
Requirements
Python 3.5+
click
scikit-learn
pysam
matplotlib
Installation
$ pip install rna-cd
License
AGPLv3+
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
rna_cd-0.1.0.tar.gz
(7.9 kB
view details)
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
rna_cd-0.1.0-py3-none-any.whl
(23.0 kB
view details)
File details
Details for the file rna_cd-0.1.0.tar.gz.
File metadata
- Download URL: rna_cd-0.1.0.tar.gz
- Upload date:
- Size: 7.9 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/1.13.0 pkginfo/1.5.0.1 requests/2.21.0 setuptools/40.8.0 requests-toolbelt/0.9.1 tqdm/4.31.1 CPython/3.6.7
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
a88bacede091319da4879f79b9688aea7f5a12f7f5107b3850804fed0d7044cc
|
|
| MD5 |
6b1097958136cdd6e69ab5a9f3c526eb
|
|
| BLAKE2b-256 |
13d97ed12d4e51fb38bf075eebb331e66565e3848a82e5112db72dd0363590e7
|
File details
Details for the file rna_cd-0.1.0-py3-none-any.whl.
File metadata
- Download URL: rna_cd-0.1.0-py3-none-any.whl
- Upload date:
- Size: 23.0 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/1.13.0 pkginfo/1.5.0.1 requests/2.21.0 setuptools/40.8.0 requests-toolbelt/0.9.1 tqdm/4.31.1 CPython/3.6.7
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
9939eff32a0d3dd388b6f1592c0c8bfb38213d373e2ec5a42653bf078b82d013
|
|
| MD5 |
d3a0ea7382fae6010fc724d278a28f5b
|
|
| BLAKE2b-256 |
459340f3668c98be54536288a9afd3dab75d4356f020afb3462fdffca7c3a9c3
|