sparsestack 0.1.1

Python library to handle stacks of sparse COO arrays efficiently.

sparsestack

Memory efficient stack of multiple 2D sparse arrays.

First code example (until better readme is done...)

import numpy as np
from sparsestack import StackedSparseArray

# Create some fake data
scores1 = np.random.random((12, 10))
scores2 = np.random.random((12, 10))
scores_array = StackedSparseArray(12, 10)
scores_array.add_dense_matrix(scores1, "scores_1")
scores_array = scores_array.filter_by_range("scores_1", low=0.5)

# Add second scores and filter
scores_array.add_dense_matrix(scores2, "scores_2")
scores_array = scores_array.filter_by_range("scores_2", low=0.1, high=0.4)

# Scores can be accessed using (limited) slicing capabilities
scores_array[3, 4]  # => scores_1 and scores_2 at position row=3, col=4
scores_array[3, :]  # => tuple with row, col, scores for all entries in row=3
scores_array[:, 2]  # => tuple with row, col, scores for all entries in col=2
scores_array[3, :, 0]  # => tuple with row, col, scores_1 for all entries in row=3
scores_array[3, :, "scores_1"]  # => same as the one before

# Scores can also be converted to a dense numpy array:
scores2_after_filtering = scores_array.to_array("scores_2")