symfem 2021.10.1

a symbolic finite element definition library

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Symfem is a symbolic finite element definition library, that can be used to symbolically evaluate the basis functions of a finite element space. Symfem can:

• Symbolically compute the basis functions of a wide range of finite element spaces
• Symbolically compute derivatives and vector products and substitute values into functions
• Allow the user to define their own element using the Ciarlet definition of a finite element
• Be used to verify that the basis functions of a given space have some desired properties

You can find details of recent changes to Symfem in the changelog.

Installing Symfem

Installing from source

Symfem can be installed by downloading the GitHub repo and running:

python3 setup.py install

Installing using pip

The latest release of Symfem can be installed by running:

pip3 install symfem

Installing using conda

The latest release of Symfem can be installed by running:

conda install symfem

Testing Symfem

To run the Symfem unit tests, clone the repository and run:

python3 -m pytest test/

You may instead like to run the following, as this will skip the slowest tests.

python3 -m pytest test/ --speed fast

Using Symfem

Finite elements can be created in Symfem using the symfem.create_element() function. For example, some elements are created in the following snippet:

import symfem

lagrange = symfem.create_element("triangle", "Lagrange", 1)
rt = symfem.create_element("tetrahedron", "Raviart-Thomas", 2)
nedelec = symfem.create_element("triangle", "N2curl", 1)
qcurl = symfem.create_element("quadrilateral", "Qcurl", 2)

The polynomial basis of an element can be obtained by calling get_polynomial_basis():

import symfem

lagrange = symfem.create_element("triangle", "Lagrange", 1)
print(lagrange.get_basis_functions())

[-x - y + 1, x, y]

Each basis function will be a Sympy symbolic expression.

Derivative of these basis functions can be computed using the functions in symfem.calculus. Vector-valued basis functions can be manipulated using the functions in symfem.vector.

The function map_to_cell can be used to map the basis functions of a finite element to a non-default cell:

import symfem

lagrange = symfem.create_element("triangle", "Lagrange", 1)
print(lagrange.get_basis_functions())
print(lagrange.map_to_cell([(0,0), (2, 0), (2, 1)]))

[-x - y + 1, x, y]
[1 - x/2, x/2 - y, y]

Further documentation

More detailed documentation of the latest release version of Symfem can be found on Read the Docs. A series of example uses of Symfem can be found in the demo folder or viewed on Read the Docs.

Details of the definition of each element can be found on DefElement alongside Symfem snippets for creating the element.

Getting help

You can ask questions about using Symfem by using GitHub Discussions. Bugs can be reported using the GitHub issue tracker.

Contributing to Symfem

Reporting bugs

If you find a bug in Symfem, please report it on the issue tracker.

Suggesting enhancements

If you want to suggest a new feature or an improvement of a current feature, you can submit this on the issue tracker.

Submitting a pull request

If you want to directly submit code to Symfem, you can do this by forking the Symfem repo, then submitting a pull request. If you want to contribute, but are unsure where to start, have a look at the issues labelled "good first issue".

On opening a pull request, unit tests and flake8 style checks will run. You can click on these in the pull request to see where (if anywhere) there are errors in your code.

Code of conduct

We expect all our contributors to follow the Contributor Covenant. Any unacceptable behaviour can be reported to Matthew ([e-mail]).

Available cells and elements

Interval

The reference interval has vertices (0,) and (1,). Its sub-entities are numbered as follows.

interval_numbering.png)

List of supported elements

• Bernstein (alternative names: Bernstein-Bezier)
• bubble
• dPc
• Hermite
• Lagrange (alternative names: P)
• Morley-Wang-Xu (alternative names: MWX)
• serendipity (alternative names: S)
• Taylor (alternative names: discontinuous Taylor)
• vector Lagrange (alternative names: vP)
• Wu-Xu

Triangle

The reference triangle has vertices (0, 0), (1, 0), and (0, 1). Its sub-entities are numbered as follows.

triangle_numbering.png)

List of supported elements

• Argyris
• Arnold-Winther (alternative names: AW, conforming Arnold-Winther)
• Bell
• Bernardi-Raugel
• Bernstein (alternative names: Bernstein-Bezier)
• Brezzi-Douglas-Fortin-Marini (alternative names: BDFM)
• Brezzi-Douglas-Marini (alternative names: BDM, N2div)
• bubble
• bubble enriched Lagrange
• bubble enriched vector Lagrange
• conforming Crouzeix-Raviart (alternative names: conforming CR)
• Crouzeix-Raviart (alternative names: CR, Crouzeix-Falk, CF)
• Fortin-Soulie (alternative names: FS)
• Guzman-Neilan
• Hellan-Herrmann-Johnson (alternative names: HHJ)
• Hermite
• Hsieh-Clough-Tocher (alternative names: Clough-Tocher, HCT, CT)
• Kong-Mulder-Veldhuizen (alternative names: KMV)
• Lagrange (alternative names: P)
• Mardal-Tai-Winther (alternative names: MTW)
• matrix Lagrange
• Morley
• Morley-Wang-Xu (alternative names: MWX)
• Nedelec (alternative names: Nedelec1, N1curl)
• Nedelec2 (alternative names: N2curl)
• nonconforming Arnold-Winther (alternative names: nonconforming AW)
• Raviart-Thomas (alternative names: RT, N1div)
• reduced Hsieh-Clough-Tocher (alternative names: rHCT)
• Regge
• symmetric matrix Lagrange
• Taylor (alternative names: discontinuous Taylor)
• transition
• vector Lagrange (alternative names: vP)
• Wu-Xu

Quadrilateral

The reference quadrilateral has vertices (0, 0), (1, 0), (0, 1), and (1, 1). Its sub-entities are numbered as follows.

quadrilateral_numbering.png)

List of supported elements

• Bogner-Fox-Schmit (alternative names: BFS)
• Brezzi-Douglas-Fortin-Marini (alternative names: BDFM)
• bubble
• direct serendipity
• dPc
• NCE (alternative names: RTCE, Qcurl, Nedelec, Ncurl)
• NCF (alternative names: RTCF, Qdiv)
• Q (alternative names: Lagrange, P)
• serendipity (alternative names: S)
• serendipity Hcurl (alternative names: Scurl, BDMCE, AAE)
• serendipity Hdiv (alternative names: Sdiv, BDMCF, AAF)
• tiniest tensor (alternative names: TNT)
• tiniest tensor Hcurl (alternative names: TNTcurl)
• tiniest tensor Hdiv (alternative names: TNTdiv)
• trimmed serendipity Hcurl (alternative names: TScurl)
• trimmed serendipity Hdiv (alternative names: TSdiv)
• vector dPc
• vector Q (alternative names: vQ)

Tetrahedron

The reference tetrahedron has vertices (0, 0, 0), (1, 0, 0), (0, 1, 0), and (0, 0, 1). Its sub-entities are numbered as follows.

tetrahedron_numbering.png)

List of supported elements

• Bernardi-Raugel
• Bernstein (alternative names: Bernstein-Bezier)
• Brezzi-Douglas-Fortin-Marini (alternative names: BDFM)
• Brezzi-Douglas-Marini (alternative names: BDM, N2div)
• bubble
• Crouzeix-Raviart (alternative names: CR, Crouzeix-Falk, CF)
• Guzman-Neilan
• Hermite
• Kong-Mulder-Veldhuizen (alternative names: KMV)
• Lagrange (alternative names: P)
• Mardal-Tai-Winther (alternative names: MTW)
• matrix Lagrange
• Morley-Wang-Xu (alternative names: MWX)
• Nedelec (alternative names: Nedelec1, N1curl)
• Nedelec2 (alternative names: N2curl)
• Raviart-Thomas (alternative names: RT, N1div)
• Regge
• symmetric matrix Lagrange
• Taylor (alternative names: discontinuous Taylor)
• transition
• vector Lagrange (alternative names: vP)
• Wu-Xu

Hexahedron

The reference hexahedron has vertices (0, 0, 0), (1, 0, 0), (0, 1, 0), (1, 1, 0), (0, 0, 1), (1, 0, 1), (0, 1, 1), and (1, 1, 1). Its sub-entities are numbered as follows.

hexahedron_numbering.png)

List of supported elements

• Brezzi-Douglas-Duran-Fortin (alternative names: BDDF)
• Brezzi-Douglas-Fortin-Marini (alternative names: BDFM)
• bubble
• dPc
• NCE (alternative names: RTCE, Qcurl, Nedelec, Ncurl)
• NCF (alternative names: RTCF, Qdiv)
• Q (alternative names: Lagrange, P)
• serendipity (alternative names: S)
• serendipity Hcurl (alternative names: Scurl, BDMCE, AAE)
• serendipity Hdiv (alternative names: Sdiv, BDMCF, AAF)
• tiniest tensor (alternative names: TNT)
• tiniest tensor Hcurl (alternative names: TNTcurl)
• tiniest tensor Hdiv (alternative names: TNTdiv)
• trimmed serendipity Hcurl (alternative names: TScurl)
• trimmed serendipity Hdiv (alternative names: TSdiv)
• vector dPc
• vector Q (alternative names: vQ)

Prism

The reference prism has vertices (0, 0, 0), (1, 0, 0), (0, 1, 0), (0, 0, 1), (1, 0, 1), and (0, 1, 1). Its sub-entities are numbered as follows.

prism_numbering.png)

List of supported elements

• Lagrange (alternative names: P)
• Nedelec (alternative names: Ncurl)

Pyramid

The reference pyramid has vertices (0, 0, 0), (1, 0, 0), (0, 1, 0), (1, 1, 0), and (0, 0, 1). Its sub-entities are numbered as follows.

pyramid_numbering.png)

List of supported elements

• Lagrange (alternative names: P)

Dual polygon

The reference dual polygon (hexagon example shown) has vertices (1, 0), (3/4, sqrt(3)/4), (1/2, sqrt(3)/2), (0, sqrt(3)/2), (-1/2, sqrt(3)/2), (-3/4, sqrt(3)/4), (-1, 0), (-3/4, -sqrt(3)/4), (-1/2, -sqrt(3)/2), (0, -sqrt(3)/2), (1/2, -sqrt(3)/2), and (3/4, -sqrt(3)/4). Its sub-entities are numbered as follows.

dual_polygon_numbering.png)

List of supported elements

• Buffa-Christiansen (alternative names: BC)
• dual polynomial (alternative names: dual P, dual)
• rotated Buffa-Christiansen (alternative names: RBC)