Variant tools: an integrated annotation and analysis package for next-generation sequencing data
Project description
Variant Tools
A command line tool for the manipulation, annotation, and analysis of genetic variants from next-generation sequencing studies.
Installation
If you are using a conda environment, you can install variant tools with command
conda install variant_tools -c bioconda -c conda-forge
Option -c conda-forge is required to enforce the use of conda-forge version of dependencies (e.g. boost-cpp) over their counterpoarts in the base channel.
Otherwise, you can try to install it through pip
pip install variant_tools
You will need to install
libboostgslnumpyCythonhdf5blosc- A C++ compiler such as
gcc
which, in a conda environment, could be installed with command
conda install -c conda-forge boost-cpp gsl numpy cython blosc hdf5
This method can be used if you download or clone the latest version of variant tools from this repository.
Documentation
Please refer to Variant Tools documentation for details.
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