Skip to main content

Wrapper for querying VirtualFlyBrain servers.

Project description

VFB_connect test_vfb-connect publish-to-pypi PyPI version DOI

test_notebooks Documentation Status

VFB_connect is a Python lib that wraps data/knowledgeBase query endpoints and returns DataFrame tables.

Available on PyPi:

pip install vfb_connect

Some examples:

# VFB connect object wraps connections and queries to public VFB servers.

from vfb_connect import vfb

# Get TermInfo for Types/Classes, DataSets and anatomical individuals.

vfb.term('FBbt_00003686')

vfb.terms(['Ito02013'])

vfb.terms(['VFB_00010001'])

# Get all terms relevant to a brain region (all parts and all overlapping cells. You can query by label, symbol, synonym, id or xref.

vfb.get_terms_by_region('fan-shaped body')

TermInfo returns a pandas DataFrame by default but can also return a dict summary or full VFBTerms.

For more examples see our Quick Guide Jupyter Notebook

Project details


Release history Release notifications | RSS feed

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

vfb_connect-2.3.14.tar.gz (47.9 MB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

vfb_connect-2.3.14-py3-none-any.whl (7.7 MB view details)

Uploaded Python 3

File details

Details for the file vfb_connect-2.3.14.tar.gz.

File metadata

  • Download URL: vfb_connect-2.3.14.tar.gz
  • Upload date:
  • Size: 47.9 MB
  • Tags: Source
  • Uploaded using Trusted Publishing? Yes
  • Uploaded via: twine/5.1.1 CPython/3.12.7

File hashes

Hashes for vfb_connect-2.3.14.tar.gz
Algorithm Hash digest
SHA256 0c442cb0743440d5bbd192febe88ec64aa36f98d086f3d3658b6ad51d6356914
MD5 869751b546d5ef99b0b02e9be0a0455e
BLAKE2b-256 d37892066c6125b6a4bae578d6d1d6cc1cef6ba8a4d6bebaa5a36e831dcf0ccf

See more details on using hashes here.

Provenance

The following attestation bundles were made for vfb_connect-2.3.14.tar.gz:

Publisher: publish-to-pypi.yml on VirtualFlyBrain/VFB_connect

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

File details

Details for the file vfb_connect-2.3.14-py3-none-any.whl.

File metadata

  • Download URL: vfb_connect-2.3.14-py3-none-any.whl
  • Upload date:
  • Size: 7.7 MB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? Yes
  • Uploaded via: twine/5.1.1 CPython/3.12.7

File hashes

Hashes for vfb_connect-2.3.14-py3-none-any.whl
Algorithm Hash digest
SHA256 2c423e381737bdb3ea68393818bd7a8a6a8227bd3a42b50ad1ee751b78a44921
MD5 dc060de93e452d650a521933f16f5362
BLAKE2b-256 674988ddd339941f724a83bb478c871fc6a61703978230e396acabdbaacbbde3

See more details on using hashes here.

Provenance

The following attestation bundles were made for vfb_connect-2.3.14-py3-none-any.whl:

Publisher: publish-to-pypi.yml on VirtualFlyBrain/VFB_connect

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page