Fragment Quality Control for ATAC-seq
Project description
ATACFragQC
The Python toolkits designed to control the fragment quality of Bulk/SingCell ATAC-seq.
Installation
sudo python3 -m pip install ATACFragQC
Usage
# Basic usage
ATACFragQC [options] -i <input.bam> -r <reference.gtf>
# For more information
ATACFragQC -h
Features
- The distrubution of fragments in chromosomes
- The distrubution of fragment lengths
- The distrubution of fragments around transcription start sites (TSSs)
- Other feature would be supported in the future ...
Overview
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